Site Map
- News -- This page includes the news regarding OSfinder.
- What's OSfinder -- This page explains the background, the originality, and the input/output of the OSfinder program.
- Installation -- This page explains the way to install the OSfinder program.
- Getting Started -- This page explains the way to execute the OSfinder program.
-
Make Input Files
-- This page explains the way to generate
the input files of the OSfinder program.
- From GenBank Data -- This page explains the way to automatically download the genome sequence files from the NCBI GenBank database, and to parse the genome sequence files in the GBK format.
- From Ensembl Data -- This page explains the way to automatically download the protein sequence files from the Ensembl genome browser and to parse the protein sequence files downloaded.
- Execute BLASTP -- This page explains the way to perform an all-against-all comparison of the protein sequences encoded in two genomes, and to generate the input files of the OSfinder program.
- File Format -- This page explains the format of the anchor files which can be accepted by the OSfinder program.
- Mammalian Data -- You can download the anchor files that include the genomic locations of the anchors detected between mammalian genomes.
-
Visualization
-- This page explains the way
to visualize the results of OSfinder.
- Synteny Map -- This page explains the way to draw synteny maps.
- Dot-Plots -- This page explains the way to draw dot-plots.
- To Do List -- This page shows our plan to develop the OSfinder software.
- Publication -- This page shows the list of publications regarding OSfinder.
- Site Map -- This page shows the site map of the OSfinder HP.
- Contact Us -- This page shows the mail address to contact us.
- Link -- This page shows the list of links regarding OSfinder.
